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Examples

chemical/x-pdb;          <your path to viewmol>/viewmol -pdb %s
chemical/x-gaussian-log; <your path to viewmol>/viewmol -gauss %s

<your path to viewmol>

Create (or modify) your extension map. An extension map is stored by default in $HOME/.mime.types. Put the following lines into this file:

chemical/x-pdb                 pdb
chemical/x-gaussian-log        log

Set the environment variable VIEWMOLPATH to your path to Viewmol (if you start your web browser through X windows menus, make sure that this variable is really set) and restart your web browser.

Here are some examples you can try then:

• Gaussian 92 calculation of the methanol dimer (contains vibrational spectrum and normal modes and can therefore be animated)
• Gaussian 94 calculation of water (contains all data necessary to draw MO's and electron density)
• Octasilsesquioxane
• Glycerylphosphorylcholine
• Faujasite (O1 protonated)